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Color depth MIP mask search: a new tool to expedite Split-GAL4 creation

View ORCID ProfileHideo Otsuna, View ORCID ProfileMasayoshi Ito, Takashi Kawase
doi: https://doi.org/10.1101/318006
Hideo Otsuna
1Janelia Research Campus, HHMI, 19700 Helix Drive, Ashburn VA, 20147, U.S.A
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  • For correspondence: otsunah{at}janelia.hhmi.org
Masayoshi Ito
1Janelia Research Campus, HHMI, 19700 Helix Drive, Ashburn VA, 20147, U.S.A
2Institute of Molecular and Cellular Biosciences, The University of Tokyo, Yayoi, Bunkyo-ku, 113-0032 Tokyo, Japan
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Takashi Kawase
1Janelia Research Campus, HHMI, 19700 Helix Drive, Ashburn VA, 20147, U.S.A
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Abstract

The GAL4-UAS system has proven its versatility in studying the function and expression patterns of neurons the Drosophila central nervous system. Although the GAL4 system has been used for 25 years, recent genetic intersectional tools have enabled genetic targeting of very small numbers of neurons aiding in the understanding of their function. This split-GAL4 system is extremely powerful for studying neuronal morphology and the neural basis of animal behavior. However, choosing lines to intersect that have overlapping patterns restricted to one to a few neurons has been cumbersome. This challenge is now growing as the collections of GAL4 driver lines has increased. Here we present a new method and software plug-in for Fiji to dramatically improve the speed of querying large databases of potential lines to intersect and aid in the split-GAL4 creation. We also provide pre-computed datasets for the Janelia GAL4 (5,738 lines) and VT GAL4 (7,429 lines) of the Drosophila central nervous system (CNS). The tool reduced our split-GAL4 creation effort dramatically.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 09, 2018.
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Color depth MIP mask search: a new tool to expedite Split-GAL4 creation
Hideo Otsuna, Masayoshi Ito, Takashi Kawase
bioRxiv 318006; doi: https://doi.org/10.1101/318006
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Color depth MIP mask search: a new tool to expedite Split-GAL4 creation
Hideo Otsuna, Masayoshi Ito, Takashi Kawase
bioRxiv 318006; doi: https://doi.org/10.1101/318006

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