Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.59.0

Buildable Source Tarball: vg-v1.59.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

• Experimental haploid scoring model for haplotype sampling.
• Faster BAM output when using a GBZ format graph
• vg inject no longer reports invalid alignments
• vg giraffe --parameter-preset long-form option should now work again
• vg surject now complains if extra command line arguemnts are provided
• vg Mac builds no longer pass -headerpad without an argument to the linker
• vg giraffe in non-chaining single-end mode will again prioritize minimizers the same way as in paired-end mode
• README no longer interpretable as suggesting that users build with very old Clang
• vg surject now uses an unlimited --max-anchors by default
• vg clip faster on graphs with high path depth
• vg surject has improved base-level alignment accuracy with long reads
• Random walk band padding is now available outside MultipathAligner
• Gapless extension queue order should no longer cause vg giraffe output to very across compilers
• vg giraffe --show-work no longer claims to not be doing rescue when it is
• vg annotate can now output alignments in GAF.
• When reading more than 1000 BED or GFF records, vg will no longer dump the first records to standard output and forget about them.

Updated Submodules

The libbdsg and libhandlegraph submodules have been updated.